Identifiers for the 21st century : How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
Version
Published
Date Issued
2017-06-29
Author(s)
McMurry, Julie A.
Juty, Nick
Blomberg, Niklas
Burdett, Tony
Conlin, Tom
Conte, Nathalie
Courtot, Mélanie
Deck, John
Dumontier, Michel
Fellows, Donal K.
Gonzalez-Beltran, Alejandra
Gormanns, Philipp Gormanns
Grethe, Jeffrey
Hastings, Janna
Hériché, Jean-Karim
Hermjakob, Henning
Ison, Jon C.
Jimenez, Rafael C.
Jupp, Simon
Kunze, John
Laibe, Camille
Le Novère, Nicolas
Malone, James
Martin, Maria Jesus
McEntyre, Johanna R.
Morris, Chris
Juha, Muilu
Müller, Wolfgang
Rocca-Serra, Philippe
Sansone, Susanna-Assunta
Snoep, Jacky L.
Soiland-Reyes, Stian
Stanford, Natalie J.
Swainston, Neil
Washington, Nicole
Williams, Alan R.
Wimalaratne, Sarala M.
Winfree, Lilly M.
Wolstencroft, Katherine
Goble, Carole
Mungall, Christopher J.
Haendel, Melissa A.
Parkinson, Helen
Type
Article
Language
English
Abstract
In many disciplines, data are highly decentralized across thousands of online databases
(repositories, registries, and knowledgebases). Wringing value from such databases
depends on the discipline of data science and on the humble bricks and mortar that make
integration possible; identifiers are a core component of this integration infrastructure. Drawing
on our experience and on work by other groups, we outline 10 lessons we have learned
about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should
take in the design, provision and reuse of identifiers. We also outline the important considerations
for those referencing identifiers in various circumstances, including by authors and
data generators. While the importance and relevance of each lesson will vary by context,
there is a need for increased awareness about how to avoid and manage common identifier
problems, especially those related to persistence and web-accessibility/resolvability. We
focus strongly on web-based identifiers in the life sciences; however, the principles are
broadly relevant to other disciplines.
(repositories, registries, and knowledgebases). Wringing value from such databases
depends on the discipline of data science and on the humble bricks and mortar that make
integration possible; identifiers are a core component of this integration infrastructure. Drawing
on our experience and on work by other groups, we outline 10 lessons we have learned
about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should
take in the design, provision and reuse of identifiers. We also outline the important considerations
for those referencing identifiers in various circumstances, including by authors and
data generators. While the importance and relevance of each lesson will vary by context,
there is a need for increased awareness about how to avoid and manage common identifier
problems, especially those related to persistence and web-accessibility/resolvability. We
focus strongly on web-based identifiers in the life sciences; however, the principles are
broadly relevant to other disciplines.
Publisher DOI
Journal or Serie
PLOS Biology
ISSN
1544-9173
Volume
15
Issue
6
Publisher
Public Library of Science (PLoS)
Submitter
ServiceAccount
Citation apa
McMurry, J. A., Juty, N., Blomberg, N., Burdett, T., Conlin, T., Conte, N., Courtot, M., Deck, J., Dumontier, M., Fellows, D. K., Gonzalez-Beltran, A., Gormanns, P. G., Grethe, J., Hastings, J., Hériché, J.-K., Hermjakob, H., Ison, J. C., Jimenez, R. C., Jupp, S., … Parkinson, H. (2017). Identifiers for the 21st century : How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. In PLOS Biology (Vol. 15, Issue 6). Public Library of Science (PLoS). https://doi.org/10.24451/arbor.5701
File(s)![Thumbnail Image]()
Loading...
open access
Name
Identifiers for the 21st century.pdf
License
Attribution 4.0 International
Version
published
Size
835.29 KB
Format
Adobe PDF
Checksum (MD5)
4ee8758a2616ef798e1bd96ec989a253
