Evaluation of variant identification methods for whole genome sequencing data in dairy cattle

Baes, Christine F; Dolezal, Marlies A; Koltes, James E; Bapst, Beat; Fritz-Waters, Eric; Jansen, Sandra; Flury, Christine; Signer-Hasler, Heidi; Stricker, Christian; Fernando, Rohan; Fries, Ruedi; Moll, Juerg; Garrick, Dorian J; Reecy, James M; Gredler, Birgit (2014). Evaluation of variant identification methods for whole genome sequencing data in dairy cattle BMC Genomics, 15(1), p. 948. BioMed Central 10.1186/1471-2164-15-948

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The authors thank 2 anonymous reviewers whose comments and suggestions improved this manuscript considerably. C. Baes thanks M. Berner for excellent technical support, P. von Rohr and U. Schuler for fruitful discussions and critical comments on the manuscript and A. Rimmer and D. Bickhart for very insightful thoughts on variant identification methods. We would like to thank the developers of all methods compared in this paper for making their software available. Financial support from the Swiss Commission for Technology and Innovation and the Swiss Cattle Breeders Federation is gratefully acknowledged. S. Jansen was supported by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr “Synbreed –Synergistic plant and animal breeding” (FKZ: 0315528A). This research was partially computed on the HPC equipment at Iowa State University (NSF MRI grant number CNS 1229081, NSF CRI grant number 1205413).

Item Type:

Journal Article (Original Article)

Division/Institute:

School of Agricultural, Forest and Food Sciences HAFL > Resource-efficient agricultural production systems

Name:

Baes, Christine F;
Dolezal, Marlies A;
Koltes, James E;
Bapst, Beat;
Fritz-Waters, Eric;
Jansen, Sandra;
Flury, Christine;
Signer-Hasler, Heidi;
Stricker, Christian;
Fernando, Rohan;
Fries, Ruedi;
Moll, Juerg;
Garrick, Dorian J;
Reecy, James M and
Gredler, Birgit

Subjects:

Q Science > QL Zoology
S Agriculture > SF Animal culture

ISSN:

1471-2164

Publisher:

BioMed Central

Language:

English

Submitter:

Simon Lutz

Date Deposited:

01 Nov 2019 11:06

Last Modified:

01 Nov 2019 11:06

Publisher DOI:

10.1186/1471-2164-15-948

ARBOR DOI:

10.24451/arbor.8521

URI:

https://arbor.bfh.ch/id/eprint/8521

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