Prototyping a Tool for Processing Genetic Meta-Data in Microbiological Laboratories

Aeschimann, Jan; Huber, Silvan; Wüthrich, Daniel; Seth-Smith, Helena; Holm, Jürgen; Bürkle, Thomas; Sariyar, Murat (2020). Prototyping a Tool for Processing Genetic Meta-Data in Microbiological Laboratories Studies in Health Technology and Informatics, 270, pp. 397-401. IOS Press 10.3233/SHTI200190

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Next generation sequencing (NGS) technologies allow improved understanding of pathogens. In the upstream processing of generating genomic data, there is still a lack of process-oriented tools for managing corresponding meta data. In this paper, we provide a description of how a process-oriented software prototype was developed that allowed the capture and collation of metadata involved when doing NGS. Our question was: How to develop an interactive web application that supports the process-oriented management of genetic data independent of any sequencing technique?

Item Type:

Journal Article (Original Article)

Division/Institute:

School of Engineering and Computer Science > Institut für Medizininformatik I4MI

Name:

Aeschimann, Jan;
Huber, Silvan;
Wüthrich, Daniel;
Seth-Smith, Helena;
Holm, Jürgen;
Bürkle, Thomas and
Sariyar, Murat

ISSN:

1879-8365

Publisher:

IOS Press

Language:

English

Submitter:

Lea Meier

Date Deposited:

09 Nov 2020 10:45

Last Modified:

15 Jan 2024 15:31

Publisher DOI:

10.3233/SHTI200190

PubMed ID:

32570414

Uncontrolled Keywords:

data management microbiological data ngs web application

ARBOR DOI:

10.24451/arbor.13265

URI:

https://arbor.bfh.ch/id/eprint/13265

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